rename all .pxi files to .pym, move cimports/etc in .pyx to __init__.pym

[ArcRiley]

.pxi == pyrex include

.pym == pymill source

Pyrex doesn't care what the include file extensions are, the only code that does is our own setup.py and our .pyx files for the includes. PyMill will identify source files in Extension(sources=[]) by extension, so we'll need to rename these as part of the PyMill migration.

After this ticket is complete, the code should still compile fine with Pyrex.